41952 EF-G
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41952 chr_11a EF-G 113677 115115 - EF-G

Synonyms

NCBI ID Ensembl Genomes exon ID
7443253 Thaps41952.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8375

20572

hypothetical protein
0.8292

36339

(ITS1) PLN02882
0.8216

bd1828

(bd1828) NA
0.7757

39812

Sun
0.7723

649

SrmB
0.7675

38073

NAP
0.7562

15976

PTZ00348
0.7478

25522

hypothetical protein
0.7426

36609

PRK00142
0.7385

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF-G Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of... cl17170 422.286 5.91E-147 1 - 232 specific 206673
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 422.286 5.91E-147 1 - 232 superfamily 266525
mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in... cl02787 149.739 5.55E-44 259 - 339 specific 239758
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 149.739 5.55E-44 259 - 339 superfamily 261449
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 119.456 4.71E-33 351 - 424 superfamily 258632
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 119.456 4.71E-33 351 - 424 superfamily 258632

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 228774 249422 429015 Not available AT1G45332.1 287141

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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