36798 S_TKc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36798 chr_12 S_TKc 397365 402614 + S_TKc

Synonyms

NCBI ID Ensembl Genomes exon ID
7447523 Thaps36798.1, Thaps36798.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0278
 0.24

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.9222

36609

PRK00142
0.9086

21375

hypothetical protein
0.9064

37786

SrmB
0.8992

17657

HSR1_MMR1
0.8953

12971

WD40 superfamily
0.8881

13578

SrmB
0.8867

25129

hypothetical protein
0.8816

21462

(rpoT) rpot-like RNA polymerase
0.8762

262722

DEXDc superfamily
0.8727

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PKc Catalytic domain of Protein Kinases; Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the... cl09925 141.22 5.10E-37 977 - 1278 specific 173623
PKc_like superfamily Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the... - 141.22 5.10E-37 977 - 1278 superfamily 263920
RNase_Ire1_like superfamily RNase domain (also known as the kinase extension nuclease domain) of Ire1 and RNase L; This RNase... - 141.569 3.02E-38 1284 - 1415 superfamily 265676
Luminal_IRE1_like superfamily The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The... - 64.2605 5.29E-11 312 - 529 superfamily 189332
S_TKc Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-... - 166.936 1.90E-45 975 - 1280 multi-dom 214567

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11633 PHATRDRAFT_11633 205131 253242 Not available Cre08.g371052.t1.1 AT2G17520.1 Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004672 GO:0005524 GO:0006468 GO:0006397 GO:0016891 -

GO:0004672

protein kinase activity

Details: 
Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006468

protein phosphorylation

Details: 
The process of introducing a phosphate group on to a protein.
GO Category: 
BP

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0016891

endoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.
GO Category: 
MF

Add comment

Log in to post comments