37277 tigThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37277	chr_14	tig	561925	564004	+	tig

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452690	Thaps37277.2, Thaps37277.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0041

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0236	0.32	990 700

Most Highly Correlated Transcripts

6610 hypothetical protein 0.919	23462 hypothetical protein 0.9126	bd1857 (bd1857) DnaJ 0.9084	268398 PRK04173 0.903	ThpsCp134 (rpl34) ribosomal protein L34 0.9027	ThpsCp082 (rpl34) ribosomal protein L34 0.902
21235 RpsA 0.8996	21419 hypothetical protein 0.8946	40028 PLN02286 0.8942	261684 (LEUS) PLN02563 0.8932

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Trigger_N superfamily		Bacterial trigger factor protein (TF); In the Escherichia coli cytosol, a fraction of the newly...	-	82.2052	3.38E-18	74 - 207	superfamily	253331
Trigger_N superfamily		Bacterial trigger factor protein (TF); In the Escherichia coli cytosol, a fraction of the newly...	-	82.2052	3.38E-18	74 - 207	superfamily	253331
tig		trigger factor; Trigger factor is a ribosome-associated molecular chaperone and is the first...	-	216.639	3.76E-63	83 - 519	multi-dom	232831

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_bd1648	PHATRDRAFT_bd1648	214005	239770	Not available	Not available	AT5G55220.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006457 GO:0015031 -

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