38122 Chloroa_b-bind superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38122	chr_18	Chloroa_b-bind superfamily	619728	620526	-	Chloroa_b-bind superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps38122.3, Thaps38122.2, Thaps38122.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0223	0.11	0.0000034 0.000084

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9958	4882 (Lhcr4) fucoxanthin chl a/c light-harvesting protein 0.9905	23808 hypothetical protein 0.989	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9878	3816 (Lhcr7) fucoxanthin chl a/c light-harvesting protein 0.9872	bd1820 (bd1820) Fasciclin 0.9847
33131 Chloroa_b-bind 0.984	40747 Chloroa_b-bind 0.9837	2342 (Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein 0.9825	262332 Chloroa_b-bind superfamily 0.9799

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	139.493	6.04E-41	23 - 188	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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