38335 (PSB3) proteasome_beta_type_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38335 chr_19b_31 (PSB3) proteasome_beta_type_3 44433 45048 + proteasome_beta_type_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7444385 Thaps38335.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0004
 0.42

Most Highly Correlated Transcripts

37118

FeThRed_B
0.8988

12899

AAA
0.8935

16114

PLN02350
0.8843

264184

PLN00049
0.8758

9321

Sm_D3
0.8712

269347

(Fen1) PIN_FEN1
0.8688

19158

GRX_PICOT_like
0.8609

37430

Sm_D2
0.8589

24921

HA
0.8579

36007

Aldolase_II superfamily
0.8567

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 351.93 4.02E-124 6 - 200 specific 239728
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 351.93 4.02E-124 6 - 200 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 154.378 2.71E-46 5 - 203 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30003 PHATRDRAFT_30003 273592 185537 459379 Cre06.g267500.t1.2 AT1G21720.1 288866

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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