38359 (GDH_1) PRK09414
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38359 chr_19c_29 (GDH_1) PRK09414 71002 72846 - PRK09414

Synonyms

NCBI ID Ensembl Genomes exon ID
7451828 Thaps38359.2, Thaps38359.4, Thaps38359.1, Thaps38359.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0439

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0112
 0.40

Most Highly Correlated Transcripts

270222

0.9238

16295

FBPase
0.8833

7304

hypothetical protein
0.8507

22900

hypothetical protein
0.8448

13448

Sec1
0.8402

19764

MPC superfamily
0.8402

31777

(OCT1) CoA_trans superfamily
0.8369

2973

hypothetical protein
0.8357

268908

Trans_IPPS_HH
0.8325

20854

hypothetical protein
0.8287

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_bind_amino_acid_DH superfamily NAD(P) binding domain of amino acid dehydrogenase-like proteins; Amino acid dehydrogenase(DH)-like... - 301.073 1.11E-98 264 - 519 superfamily 266569
ELFV_dehydrog_N superfamily Glu/Leu/Phe/Val dehydrogenase, dimerization domain; Glu/Leu/Phe/Val dehydrogenase, dimerization... - 166.131 7.30E-49 125 - 254 superfamily 251546
ELFV_dehydrog_N superfamily Glu/Leu/Phe/Val dehydrogenase, dimerization domain; Glu/Leu/Phe/Val dehydrogenase, dimerization... - 166.131 7.30E-49 125 - 254 superfamily 251546
PRK09414 glutamate dehydrogenase; Provisional - 625.223 0 77 - 519 multi-dom 181834

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13951 PHATRDRAFT_13951 192073 Not available 69206 Cre05.g232150.t1.2 AT1G51720.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006520 GO:0016491 GO:0004354 -

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0004354

glutamate dehydrogenase (NADP+) activity

Details: 
Catalysis of the reaction: L-glutamate + H2O + NADP+ = 2-oxoglutarate + NH3 + NADPH + H+.
GO Category: 
MF

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