38494 PLN00120Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38494	chr_20	PLN00120	468610	469276	-	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps38494.2, Thaps38494.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0262	0.15	400 2500

Most Highly Correlated Transcripts

260392 (Lhcf2) fucoxanthin chlorophyll a/c protein 2 1	bd218 (bd218) Chloroa_b-bind superfamily 0.9866	bd1820 (bd1820) Fasciclin 0.9726	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9714	35934 Cytochrom_C superfamily 0.9657	31983 Chloroa_b-bind superfamily 0.9649
5174 (Lhcf8) PLN00120 0.9646	33018 (Lhcf6) PLN00120 0.964	2341 (Lhcr12) fucoxanthin chlorophyll a/c protein 0.9634	270233 hypothetical protein 0.9623

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	349.427	3.17E-123	11 - 190	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	349.427	3.17E-123	11 - 190	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_30648	PHATRDRAFT_30648	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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