34729 NGP_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34729 chr_6 NGP_1 1993399 1995339 + NGP_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7446566 Thaps34729.2, Thaps34729.1, Thaps34729.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0268
 0.24

Most Highly Correlated Transcripts

40341

WD40 superfamily
0.942

27873

PLN02274
0.9375

bd96

(bd96) eIF-3_zeta
0.9293

bd190

(bd190) SrmB
0.9217

21397

Nop52 superfamily
0.9158

24016

Ebp2 superfamily
0.915

268238

PRK05192
0.911

39022

COG2319
0.9109

34006

Sun
0.9079

22203

(Tp_CCHH28) zf-C2H2_2
0.907

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NGP_1 A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases;... cl17249 330.415 1.77E-110 241 - 397 specific 206751
YlqF_related_GTPase superfamily Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and... - 330.415 1.77E-110 241 - 397 superfamily 247803
NGP1NT superfamily NGP1NT (NUC091) domain; This N terminal domain is found in a subfamily of hypothetical nucleolar... - 148.978 2.11E-42 58 - 204 superfamily 254634
NGP1NT superfamily NGP1NT (NUC091) domain; This N terminal domain is found in a subfamily of hypothetical nucleolar... - 148.978 2.11E-42 58 - 204 superfamily 254634
COG1161 Predicted GTPases [General function prediction only] - 205.694 1.38E-60 232 - 509 multi-dom 224083

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25133 PHATRDRAFT_25133 214636 290110 51701 Cre07.g340050.t1.1 AT1G52980.1 359933

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

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