40733 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40733 chr_5 RNase_PH superfamily 1020197 1021072 + RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450036 Thaps40733.1, Thaps40733.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0055

Most Highly Correlated Transcripts

40200

TRX_reduct
0.8755

13393

PLN02321
0.8752

16114

PLN02350
0.8744

21742

RNase_PH_RRP45
0.8724

13448

Sec1
0.8697

3539

hypothetical protein
0.8686

19158

GRX_PICOT_like
0.8681

40798

IF4E
0.8679

35136

NA
0.8662

264598

AAA
0.8649

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 124.599 1.14E-34 14 - 241 superfamily 261591

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16766 PHATRDRAFT_16766 190484 155568 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000175 GO:0003723 GO:0006396 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

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