40774 (ALATS2) PLN02900
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40774 chr_5 (ALATS2) PLN02900 1426993 1430124 + PLN02900

Synonyms

NCBI ID Ensembl Genomes exon ID
7448134 Thaps40774.3, Thaps40774.2, Thaps40774.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

262047

Ube1
0.8692

268875

hypothetical protein
0.8603

34303

TEF1
0.8522

264365

PRK08661
0.8498

21291

hypothetical protein
0.8471

262091

eukaryotic translation initiation factor 3, subunit 10
0.8368

11220

eIF2A
0.8347

268714

TypA_BipA
0.8219

12899

AAA
0.8215

25177

TLC superfamily
0.8196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is... cl00268 395.96 1.40E-130 17 - 260 specific 238360
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 395.96 1.40E-130 17 - 260 superfamily 260313
tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of... cl08469 63.9406 1.43E-12 736 - 770 specific 197931
tRNA_SAD superfamily Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... - 63.9406 1.43E-12 736 - 770 superfamily 263673
PLN02900 alanyl-tRNA synthetase - 1473.32 0 4 - 966 multi-dom 215487

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
5840 PHATRDRAFT_47999 PHATRDRAFT_47999 171176 323278 Not available Not available AT1G50200.1 473521

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004813 GO:0005524 GO:0006419 -

GO:0004813

alanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006419

alanyl-tRNA aminoacylation

Details: 
The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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