4086 LRR_5Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4086	chr_4	LRR_5	128743	130878	+	LRR_5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446730	Thaps4086.1, Thaps4086.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0365

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0109	0.50	0.00000011 0.067

Most Highly Correlated Transcripts

bd524 (bd524) NA 0.7978	bd1807 (bd1807) RRS1 superfamily 0.781	1440 hypothetical protein 0.7723	bd1806 (bd1806) AAT_I superfamily 0.7682	39516 PLN02951 0.7668	6370 SpoU_methylase superfamily 0.762
20829 HPP 0.7448	4067 hypothetical protein 0.7428	5394 hypothetical protein 0.7396	22720 hypothetical protein 0.7084

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_5		Leucine rich repeats (6 copies); This family includes a number of leucine rich repeats. This family...	-	90.6703	1.84E-21	2 - 79	multi-dom	257643
LRR_5		Leucine rich repeats (6 copies); This family includes a number of leucine rich repeats. This family...	-	90.6703	1.84E-21	2 - 79	multi-dom	257643

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	192791	77772	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments