40985 Nucleostemin_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40985 chr_6 Nucleostemin_like 656380 658023 + Nucleostemin_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7448593 Thaps40985.1, Thaps40985.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9637

bd1709

(bd1709) NA
0.9182

32807

DEADc
0.9151

30833

Bystin
0.9111

34006

Sun
0.9053

39953

SrmB
0.9017

268559

COG1084
0.8993

21553

Nop16 superfamily
0.8988

23354

RNA-binding protein of the pumilio family
0.8981

31047

Brix
0.8978

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nucleostemin_like A circularly permuted subfamily of the Ras GTPases; Nucleostemin (NS) is a nucleolar protein that... cl17249 279.845 1.04E-91 154 - 330 specific 206753
YlqF_related_GTPase superfamily Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and... - 279.845 1.04E-91 154 - 330 superfamily 247803
GN3L_Grn1 superfamily GNL3L/Grn1 putative GTPase; Grn1 (yeast) and GNL3L (human) are putative GTPases which are required... - 66.1275 1.65E-13 14 - 91 superfamily 254983
GN3L_Grn1 superfamily GNL3L/Grn1 putative GTPase; Grn1 (yeast) and GNL3L (human) are putative GTPases which are required... - 66.1275 1.65E-13 14 - 91 superfamily 254983
COG1161 Predicted GTPases [General function prediction only] - 190.286 1.68E-55 141 - 455 multi-dom 224083

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_2182 PHATRDRAFT_2182 170214 163793 Not available Cre12.g533050.t1.2 AT3G07050.1 498057

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

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