40995 phr2
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
40995 chr_6 phr2 719331 720972 + phr2
NCBI ID Ensembl Genomes exon ID
7443593 Thaps40995.2, Thaps40995.1, Thaps40995.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049
PRK05279
0.9383
(GGTA1) PLN02789
0.9324
hypothetical protein
0.9238
0.922
TRX_reduct
0.9204
(Tp_bZIP17) regulator [Rayko]
0.9195
hypothetical protein
0.9185
hypothetical protein
0.9184
FBPase
0.9183
PLN02321
0.9181
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 144.699 1.32E-39 208 - 442 superfamily 251955
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 144.699 1.32E-39 208 - 442 superfamily 251955
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 75.7041 3.06E-16 1 - 157 superfamily 250195
phr2 photolyase PhrII; All proteins in this family for which functions are known are DNA-photolyases... - 424.583 1.37E-144 1 - 442 multi-dom 129679
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51952 PHATRDRAFT_51952 157561 210353 67418 Cre12.g533000.t1.2 AT1G12370.2 310529
KEGG description KEGG Pathway
Not available Not available
GO:0003913 GO:0006281 GO:0003904 -

DNA photolyase activity

Details: 
Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF
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