42123 PTZ00295
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42123 chr_12 PTZ00295 691723 698576 + PTZ00295

Synonyms

NCBI ID Ensembl Genomes exon ID
7447581 Thaps42123.1, Thaps42123.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0493

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0167
 0.37

Most Highly Correlated Transcripts

24521

(GFA_1) PTZ00295
0.9781

bd1844

(bd1844) NA
0.9111

bd1770

(bd1770) NA
0.824

8952

PTZ00295
0.8227

bd1749

(bd1749) NA
0.8072

bd1771

(bd1771) NA
0.7358

21663

hypothetical protein
0.7312

36889

S_TKc
0.7292

21661

hypothetical protein
0.7217

270222

0.7196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of... cl00319 250.827 3 - 189 specific 238366
Gn_AT_II superfamily Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen... - 250.827 3 - 189 superfamily 260351
SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and... cl00389 189.781 431 - 590 specific 240142
SIS superfamily SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and... - 119.909 6.75E-32 263 - 392 superfamily 260399
SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and... cl00389 119.909 263 - 392 specific 240141
SIS superfamily SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and... - 119.909 6.75E-32 263 - 392 superfamily 260399
PTZ00295 - 753.394 3 - 592 multi-dom 240349

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268040 Not available Not available 294977 Not available Not available Not available 359322

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0005529 GO:0005975 GO:0004360 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0005529

NA

Details: 
NA
GO Category: 
NA

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0004360

glutamine-fructose-6-phosphate transaminase (isomerizing) activity

Details: 
Catalysis of the reaction: beta-D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate.
GO Category: 
MF

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