42320 PTZ00464 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42320	chr_14	PTZ00464 superfamily	176132	177213	+	PTZ00464 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450837	Thaps42320.1, Thaps42320.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0107

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0048	0.39	71000 7300

Most Highly Correlated Transcripts

25386 hypothetical protein 0.9037	268160 SPFH_like_u4 0.9036	4026 hypothetical protein 0.8988	268343 NA 0.8888	26470 (GFS1) PLN02725 0.8879	261882 Thioredoxin_like superfamily 0.8848
37934 GRX_PICOT_like 0.8759	23024 hypothetical protein 0.8748	26991 GRX_GRXh_1_2_like 0.8668	22307 TRAPP 0.8649

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PTZ00464 superfamily		SNF-7-like protein; Provisional	-	173.464	1.21E-53	1 - 222	superfamily	240425

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_18620	PHATR_18620	271466	290465	434197	Cre13.g577950.t1.2	AT5G04850.1	488619

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0005554 -

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