42475 PLN00128
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
42475 chr_14 PLN00128 877704 880209 - PLN00128
NCBI ID Ensembl Genomes exon ID
7441832 Thaps42475.1, Thaps42475.2, Thaps42475.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0213
Normalized Mean Residue
Thaps_bicluster_0137
0.33
hypothetical protein
0.9017
aliphatic_amidase
0.9003
RpoD_Cterm
0.8975
SodA
0.8919
hypothetical protein
0.8916
(SDH1) sdhB
0.8852
hypothetical protein
0.8848
Arginase_HDAC superfamily
0.8822
hypothetical protein
0.8808
PTZ00430
0.8796
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK06175 superfamily L-aspartate oxidase; Provisional - 252.683 1.60E-76 45 - 461 superfamily 180442
Succ_DH_flav_C superfamily Fumarate reductase flavoprotein C-term; This family contains fumarate reductases, succinate... - 175.495 8.85E-52 502 - 637 superfamily 251613
Succ_DH_flav_C superfamily Fumarate reductase flavoprotein C-term; This family contains fumarate reductases, succinate... - 175.495 8.85E-52 502 - 637 superfamily 251613
PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit - 1233.19 0 4 - 637 multi-dom 177739
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41812 PHATRDRAFT_41812 173934 299232 450514 Cre14.g619133.t1.1 AT5G66760.1 248886
KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110
GO:0006118 GO:0015036 GO:0016491 GO:0016627 GO:0006099 GO:0050660 GO:0008177 -

NA

Details: 
NA
GO Category: 
NA

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

oxidoreductase activity, acting on the CH-CH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

tricarboxylic acid cycle

Details: 
A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO Category: 
BP

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

succinate dehydrogenase (ubiquinone) activity

Details: 
Catalysis of the reaction: succinate + ubiquinone = fumarate + ubiquinol.
GO Category: 
MF
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