4376 (PRK1) PRK
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4376 chr_4 (PRK1) PRK 870636 871805 + PRK

Synonyms

NCBI ID Ensembl Genomes exon ID
7447914 Thaps4376.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0128
 0.43

Most Highly Correlated Transcripts

428

FBP_aldolase_IIA
0.9364

268474

PLN02657
0.8913

270396

hypothetical protein
0.8788

25892

PLN03116
0.877

270312

hypothetical protein
0.8768

32924

RPE
0.8744

1326

sopT
0.8613

31012

(Cpx1) PLN02873
0.8525

264039

(CYP2) p450 superfamily
0.852

270340

hypothetical protein
0.8517

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or... cl17190 435.228 8.66E-153 40 - 331 specific 238984
NK superfamily Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of... - 435.228 8.66E-153 40 - 331 superfamily 266541

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10208 PHATRDRAFT_10208 193653 312790 432636 Cre12.g554800.t1.2 AT1G32060.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004849 GO:0005524 GO:0005975 GO:0008974 GO:0009058 GO:0016301 -

GO:0004849

uridine kinase activity

Details: 
Catalysis of the reaction: ATP + uridine = ADP + UMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0008974

phosphoribulokinase activity

Details: 
Catalysis of the reaction: D-ribulose 5-phosphate + ATP = D-ribulose 1,5-bisphosphate + ADP + 2 H(+).
GO Category: 
MF

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

GO:0016301

kinase activity

Details: 
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
GO Category: 
MF

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