4523 CHDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4523	chr_4	CHD	1254221	1256932	+	CHD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446105	Thaps4523.4, Thaps4523.2, Thaps4523.1, Thaps4523.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0179

Most Highly Correlated Transcripts

bd1150 (bd1150) PLN02433 0.848	34266 (RM17) rplQ 0.8305	12899 AAA 0.8304	7827 hypothetical protein 0.8304	5552 hypothetical protein 0.8274	23795 SGT1 superfamily 0.8232
16295 FBPase 0.8194	264556 FBPase 0.8103	22822 NTF2 0.8087	35116 SF3b10 0.8056

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CHD		cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also...	cl11967	83.3974	3.50E-18	477 - 674	specific	143636
Nucleotidyl_cyc_III superfamily		Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group...	-	83.3974	3.50E-18	477 - 674	superfamily	264492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	535993

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

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