4742 PIN_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4742 chr_4 PIN_SF superfamily 1802772 1805814 - PIN_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443754 Thaps4742.2, Thaps4742.1, Thaps4742.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0079

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0213
 0.25

Most Highly Correlated Transcripts

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9747

bd1214

(bd1214) KISc_C_terminal
0.958

bd950

(bd950) NA
0.9526

bd439

(bd439) POLBc_alpha
0.9486

bd843

(bd843) NA
0.9413

bd529

(bd529) SNF2_N
0.9409

bd890

(bd890) NA
0.9275

bd1081

(bd1081) NA
0.9234

bd1173

(bd1173) S_TKc
0.9162

bd211

(bd211) Maf_Ham1 superfamily
0.9124

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 174.992 1.35E-49 1 - 233 superfamily 265458
H3TH_StructSpec-5'-nucleases superfamily H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in... - 62.551 8.61E-12 374 - 435 superfamily 265460

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48206 PHATRDRAFT_48206 261553 110816 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Mismatch repair map03430

GO Terms

GO:0003677 GO:0004518 GO:0006281 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

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