8586 DUF563Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8586	chr_10	DUF563	1012469	1015061	+	DUF563

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449338	Thaps8586.4, Thaps8586.3, Thaps8586.1, Thaps8586.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0366

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

38472 HA2 0.8807	41979 PRK06116 0.8794	bd524 (bd524) NA 0.874	25444 Glyco_transf_22 superfamily 0.8709	269925 AAA_12 superfamily 0.8648	38011 PKc_like superfamily 0.8637
19623 RRM3_MEI2_like 0.8621	36007 Aldolase_II superfamily 0.8602	5036 Josephin superfamily 0.8586	4267 COG0790 0.8581

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF563		Protein of unknown function (DUF563); Family of uncharacterized proteins.	cl15705	90.1666	2.26E-20	551 - 768	specific	252682
DUF563 superfamily		Protein of unknown function (DUF563); Family of uncharacterized proteins.	-	90.1666	2.26E-20	551 - 768	superfamily	265766

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments