33046 PLN02265
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33046 chr_3 PLN02265 1696533 1698474 - PLN02265

Synonyms

NCBI ID Ensembl Genomes exon ID
7451335 Thaps33046.1, Thaps33046.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0094
 0.37

Most Highly Correlated Transcripts

38964

Chorismate_synthase
0.8975

5293

PRK00772
0.8972

269759

hypothetical protein
0.8846

21865

hypothetical protein
0.8798

9247

hypothetical protein
0.8761

38924

PLN02627
0.8701

22547

hypothetical protein
0.8692

261636

0.869

14192

PLN02449
0.8689

4524

DHQS
0.8682

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-... cl00268 152.412 9.20E-43 415 - 619 specific 238392
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 152.412 9.20E-43 415 - 619 superfamily 260313
B3_4 B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA... cl19243 80.381 2.18E-17 124 - 291 specific 214876
B3_4 superfamily B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA... - 80.381 2.18E-17 124 - 291 superfamily 267596
B5 tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. cl08394 70.6017 5.69E-15 322 - 397 specific 197942
B5 superfamily tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. - 70.6017 5.69E-15 322 - 397 superfamily 263627
PLN02265 probable phenylalanyl-tRNA synthetase beta chain - 1020.77 0 1 - 620 multi-dom 215149

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27709 PHATRDRAFT_27709 273892 21296 441352 Cre13.g603900.t1.2 AT1G72550.1 545525

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004826 GO:0005524 GO:0005737 GO:0006432 GO:0009328 -

GO:0004826

phenylalanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006432

phenylalanyl-tRNA aminoacylation

Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0009328

phenylalanine-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).
GO Category: 
CC

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