5672 HAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5672	chr_5	HA	1785493	1786597	-	HA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445696	Thaps5672.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0346

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0145	0.29	0.0013 1.1

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9255	12836 EEP superfamily 0.8742	34629 Rad10 superfamily 0.8724	13448 Sec1 0.8718	32486 HA 0.8653	37497 cysE 0.8644
21504 hypothetical protein 0.8555	bd874 (bd874) NA 0.8535	22716 TH1 superfamily 0.8535	12899 AAA 0.8532

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	63.0933	7.05E-13	145 - 199	superfamily	251968
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	63.0933	7.05E-13	145 - 199	superfamily	251968

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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