5687 AAA_26Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5687	chr_5	AAA_26	1826463	1828203	+	AAA_26

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445229	Thaps5687.1, Thaps5687.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0021

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0092	0.42	0.2 0.0004

Most Highly Correlated Transcripts

34191 CobN_like 0.8672	19764 MPC superfamily 0.8664	3071 NA 0.8637	3867 hypothetical protein 0.8561	16295 FBPase 0.8481	7037 Aldo_ket_red 0.8437
12091 DUF4033 0.8304	36995 LplA 0.8289	5555 PAP_fibrillin superfamily 0.8268	25944 p450 superfamily 0.8256

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_26		AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis such as...	-	99.6224	4.37E-24	104 - 357	multi-dom	257820

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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