6032 UboxThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6032	chr_6	Ubox	529589	530595	-	Ubox

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451177	Thaps6032.3, Thaps6032.2, Thaps6032.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0137

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0036	0.41

Most Highly Correlated Transcripts

1850 PKc_like superfamily 0.8864	10353 hypothetical protein 0.8856	3071 NA 0.8731	11386 hypothetical protein 0.8724	5212 (Tp_CCCH26) regulator [Rayko] 0.8688	10889 hypothetical protein 0.8682
20977 COG0398 0.8679	35279 (H4_2) H4 0.8672	20405 GRX_GRXh_1_2_like 0.8667	1762 PRA1 superfamily 0.8621

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ubox		Modified RING finger domain; Modified RING finger domain, without the full complement of Zn2+-...	cl17544	71.8825	1.28E-16	26 - 87	specific	128780
U-box superfamily		U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding...	-	71.8825	1.28E-16	26 - 87	superfamily	266741

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0016567 -

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