6442 choice_anch_BThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6442	chr_6	choice_anch_B	1577510	1579854	+	choice_anch_B

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442764	Thaps6442.2, Thaps6442.1, Thaps6442.5, Thaps6442.3, Thaps6442.6, Thaps6442.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0153

Most Highly Correlated Transcripts

22333 hypothetical protein 0.9114	263610 COG3899 0.9081	22947 zf-UBR 0.8978	11135 NCA2 superfamily 0.8977	24852 hypothetical protein 0.8937	25600 hypothetical protein 0.8924
8762 SNF2_N 0.8924	4672 hypothetical protein 0.8876	24063 COG3899 0.8867	25356 DUF1325 superfamily 0.8858

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
choice_anch_B		choice-of-anchor B domain; This domain, about 385 amino acids long, can have either of at least two...	-	159.808	1.43E-43	205 - 562	multi-dom	234536

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	219287	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments