6883 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6883 chr_7 Peptidase_C19 superfamily 723426 727148 + Peptidase_C19 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449202 Thaps6883.2, Thaps6883.4, Thaps6883.1, Thaps6883.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0451

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.8889

1765

hypothetical protein
0.8787

1275

hypothetical protein
0.8786

bd1849

(bd1849) NA
0.8751

11478

hypothetical protein
0.8743

25198

HA
0.8699

4482

hypothetical protein
0.8696

20633

Aa_trans superfamily
0.8689

262157

E1_like_apg7
0.8674

24920

hypothetical protein
0.8673

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 182.861 8.27E-51 320 - 519 superfamily 261337
RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] cl00192 115.286 1.07E-27 873 - 1137 specific 223598
ribokinase_pfkB_like superfamily ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including... - 115.286 1.07E-27 873 - 1137 superfamily 260247
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 158.725 1.79E-42 278 - 519 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15310 PHATRDRAFT_15310 181718 184165 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

Add comment

Log in to post comments