803 Synaptobrevin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
803 chr_18 Synaptobrevin 300127 301137 + Synaptobrevin

Synonyms

NCBI ID Ensembl Genomes exon ID
7442959 Thaps803.2, Thaps803.3, Thaps803.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0418

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0085
 0.45

Most Highly Correlated Transcripts

bd1934

(bd1934) NA
0.9316

bd690

(bd690) NA
0.915

bd1813

(bd1813) NA
0.9111

bd1801

(bd1801) NA
0.8948

19158

GRX_PICOT_like
0.8946

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8898

bd738

(bd738) NA
0.8895

11563

hypothetical protein
0.8844

262088

CHD
0.876

2731

hypothetical protein
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 116.1 4.39E-33 124 - 212 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 116.1 4.39E-33 124 - 212 superfamily 250253
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 94.9338 3.99E-25 28 - 110 superfamily 258059
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 94.9338 3.99E-25 28 - 110 superfamily 258059

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17683 PHATRDRAFT_17683 208589 183079 316801 Cre06.g278172.t1.1 AT5G22360.1 316227

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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