9086 (Tp_HSF_1.3i) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9086 chr_12 (Tp_HSF_1.3i) HSF_DNA-bind superfamily 488664 490225 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445825 Thaps9086.3, Thaps9086.1, Thaps9086.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0450

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

bd884

(bd884) NA
0.7677

bd694

(bd694) NA
0.7661

bd693

(bd693) HSF_DNA-bind superfamily
0.766

21670

hypothetical protein
0.7614

1740

PDZ superfamily
0.7455

6701

hypothetical protein
0.7329

22727

RCC1
0.7221

35350

PKc_like superfamily
0.7207

31011

Mito_carr
0.7196

bd1954

(bd1954) NA
0.7196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 74.8438 1.27E-16 20 - 92 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35419 PHATRDRAFT_35419 262197 257253 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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