9434 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9434	chr_13	Tryp_SPc	424009	425573	+	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453027	Thaps9434.2, Thaps9434.5, Thaps9434.3, Thaps9434.1, Thaps9434.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0097

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0282	0.29	12000 20000

Most Highly Correlated Transcripts

5439 hypothetical protein 0.9381	1940 hypothetical protein 0.938	11499 hypothetical protein 0.93	bd856 (bd856) NA 0.9218	23757 hypothetical protein 0.9148	bd1081 (bd1081) NA 0.9057
22631 hypothetical protein 0.9043	22062 hypothetical protein 0.9032	21595 hypothetical protein 0.9019	25838 hypothetical protein 0.9015

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	204.047	3.73E-63	53 - 300	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	204.047	3.73E-63	53 - 300	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	200.597	7.01E-62	53 - 297	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 GO:0004293 -

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