9570 HECTc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9570 chr_13 HECTc 799543 802288 + HECTc

Synonyms

NCBI ID Ensembl Genomes exon ID
7450500 Thaps9570.1, Thaps9570.3, Thaps9570.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0133

Most Highly Correlated Transcripts

261400

NA
0.94

30701

PRK05279
0.9304

6693

hypothetical protein
0.9285

11490

hypothetical protein
0.9215

3500

hypothetical protein
0.9211

8500

PRP38 superfamily
0.9191

260866

(ORC2) ORC2 superfamily
0.919

261640

MFS
0.9181

264647

p450 superfamily
0.917

22679

CbiO
0.9134

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... cl00077 398.476 2.78E-131 463 - 825 specific 238033
HECTc superfamily HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... - 398.476 2.78E-131 463 - 825 superfamily 260176
HECTc Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2... - 371.181 4.45E-121 487 - 817 multi-dom 214523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14345 PHATRDRAFT_14345 214383 239710 Not available Not available Not available 246594

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0004842 GO:0005622 GO:0006464 GO:0006512 -

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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