9852 SPC22 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9852 chr_14 SPC22 superfamily 537827 538735 - SPC22 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451247 Thaps9852.1, Thaps9852.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0456

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0182
 0.48

Most Highly Correlated Transcripts

4524

DHQS
0.8337

bd1844

(bd1844) NA
0.8274

268062

PRK14293
0.8219

262977

NA
0.8193

13393

PLN02321
0.8129

3051

hypothetical protein
0.8089

40200

TRX_reduct
0.8073

93

ELO
0.8064

38964

Chorismate_synthase
0.8053

269624

TIM_phosphate_binding superfamily
0.8051

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPC22 superfamily Signal peptidase subunit; Translocation of polypeptide chains across the endoplasmic reticulum... - 135.147 5.47E-39 76 - 245 superfamily 194922

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_18533 PHATR_18533 195672 260607 218228 Cre14.g620400.t1.2 AT3G05230.1 444736

KEGG

KEGG description KEGG Pathway
Protein export map03060

GO Terms

GO:0005787 GO:0006465 GO:0009003 GO:0016021 GO:0008233 GO:0008234 -

GO:0005787

signal peptidase complex

Details: 
A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space.
GO Category: 
CC

GO:0006465

signal peptide processing

Details: 
The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
GO Category: 
BP

GO:0009003

NA

Details: 
NA
GO Category: 
NA

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

GO:0008234

cysteine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

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