bd1048 (bd1048) PS_I_psaCThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1048	bd_27x41	(bd1048) PS_I_psaC	1420	1665	-	PS_I_psaC

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0256

Most Highly Correlated Transcripts

ThpsCp087 (psaC) photosystem I subunit VII 1	ThpsCp129 (psaC) photosystem I subunit VII 1	bd1426 (bd1426) psbZ 0.9202	ThpsCp056 (psbZ) photosystem II protein Z 0.9202	ThpsCp049 (petM) cytochrome b6-f complex subunit VII 0.9147	ThpsCp074 (psaJ) photosystem I subunit IX 0.8944
ThpsCt002 (trnR(ccg)) 0.856	bd1441 (bd1441) ccsA 0.8504	ThpsCp088 (ccsA) cytochrome c biogenesis protein 0.8504	ThpsCp128 (ccsA) cytochrome c biogenesis protein 0.8504

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PS_I_psaC		photosystem I iron-sulfur protein PsaC; Members of this family are PsaC, an essential component of...	cl19102	155.824	1.10E-50	2 - 81	specific	132092
HCP_like superfamily		The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (...	-	155.824	1.10E-50	2 - 81	superfamily	267455

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	298324	Not available	Not available	ATCG01060.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments