bd1611 (bd1611) psaBThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1611	bd_26x41	(bd1611) psaB	60176	63870	-	psaB

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0257

Most Highly Correlated Transcripts

ThpsCp002 (psaB) photosystem I P700 chlorophyll a apoprotein A2 0.9461	bd1736 (bd1736) Photo_RC superfamily 0.8563	17966 Alg14 0.7998	ThpsCp085 (psbA) photosystem II protein D1 0.7877	ThpsCp131 (psbA) photosystem II protein D1 0.7877	bd1753 (bd1753) NA 0.7838
ThpsCt026 (trnC(gca)) 0.7737	ThpsCt025 (trnL(uaa)) 0.7644	38879 (Lhcx2) Chloroa_b-bind 0.7615	bd1048 (bd1048) PS_I_psaC 0.7601

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
psaB		photosystem I P700 chlorophyll a apoprotein A2	cl08224	1511.17	0	1 - 733	specific	176995
PsaA_PsaB superfamily		Photosystem I psaA/psaB protein; Photosystem I psaA/psaB protein.	-	1511.17	0	1 - 733	superfamily	263540

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210694	78156	Not available	ATCG00340.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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