38879 (Lhcx2) Chloroa_b-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38879 chr_23 (Lhcx2) Chloroa_b-bind 368273 368902 + Chloroa_b-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7442680 Thaps38879.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0017

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0214
 0.34

Most Highly Correlated Transcripts

264921

(lhcx1) Chloroa_b-bind
0.93

268474

PLN02657
0.8897

5077

PLN00015
0.8752

12097

(Lhcx6) Chloroa_b-bind
0.8655

428

FBP_aldolase_IIA
0.8642

20928

hypothetical protein
0.8627

575

PRK00062
0.857

6524

phytoene_desat
0.8481

261608

PLN02585
0.8429

32201

Cob-chelat-sub
0.8386

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. cl02879 137.438 7.35E-41 55 - 197 specific 249913
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 137.438 7.35E-41 55 - 197 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262708 PHATRDRAFT_27278 PHATRDRAFT_27278 218498 Not available 419207 Cre08.g367500.t1.1 AT2G34420.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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