10613 (Tp_HSF_4.2c) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10613 chr_17 (Tp_HSF_4.2c) HSF_DNA-bind 225188 227414 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7444191 Thaps10613.2, Thaps10613.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0425

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0076
 0.36

Most Highly Correlated Transcripts

6560

COG3899
0.8856

6357

hypothetical protein
0.8833

25600

hypothetical protein
0.8806

20630

Piwi-like superfamily
0.8804

261181

Gly_transf_sug superfamily
0.872

24852

hypothetical protein
0.8718

25388

COG0116
0.8659

22947

zf-UBR
0.8627

5829

hypothetical protein
0.8626

4047

hypothetical protein
0.8576

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 103.734 3.36E-26 442 - 537 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 103.734 3.36E-26 442 - 537 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48361 PHATRDRAFT_48361 202287 202335 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003676 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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