11034 prfC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11034 chr_18 prfC 753314 755334 - prfC

Synonyms

NCBI ID Ensembl Genomes exon ID
7444835 Thaps11034.2, Thaps11034.3, Thaps11034.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0297

Most Highly Correlated Transcripts

40200

TRX_reduct
0.8945

267979

HCO3_cotransp superfamily
0.8841

23415

hypothetical protein
0.8707

6028

NA
0.8696

30701

PRK05279
0.8638

269624

TIM_phosphate_binding superfamily
0.8634

36995

LplA
0.858

4900

hypothetical protein
0.8561

9049

hypothetical protein
0.8543

268443

SAICAR_synt_Sc
0.8513

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of... cl02787 147.795 1.85E-42 373 - 459 specific 239660
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 147.795 1.85E-42 373 - 459 superfamily 261449
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 409.679 1.90E-139 64 - 332 superfamily 266525
prfC peptide chain release factor 3; Provisional - 713.83 0 61 - 607 multi-dom 179105

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27956 PHATRDRAFT_27956 226600 10641 61223 Cre01.g006150.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0005737 GO:0006415 GO:0016149 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006415

translational termination

Details: 
The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO Category: 
BP

GO:0016149

translation release factor activity, codon specific

Details: 
A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
GO Category: 
MF

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments