11594 DUF2042 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11594	chr_20	DUF2042 superfamily	580095	582969	-	DUF2042 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443396	Thaps11594.1, Thaps11594.2, Thaps11594.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0131

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0264	0.37	110 5800

Most Highly Correlated Transcripts

2575 RIO superfamily 0.9096	5291 hypothetical protein 0.9076	23651 hypothetical protein 0.8944	262719 CHD 0.8912	264344 PDEase_I 0.8908	21893 CysPc 0.8906
38652 PI-PLCc_eukaryota 0.89	23450 hypothetical protein 0.8846	5659 hypothetical protein 0.8843	4333 hypothetical protein 0.883

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF2042 superfamily		Uncharacterized conserved protein (DUF2042); This entry is the conserved N-terminal 300 residues of...	-	64.9577	1.13E-11	217 - 369	superfamily	245367

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44171	PHATR_44171	250493	178348	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments