1218 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1218 chr_1 Aa_trans superfamily 953090 956799 + Aa_trans superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0404

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0126
 0.34

Most Highly Correlated Transcripts

plastid_psb28

0.9377

20633

Aa_trans superfamily
0.9231

bd1941

(bd1941) NA
0.9196

4482

hypothetical protein
0.897

3456

Peptidase_S41_CPP
0.8967

3260

hypothetical protein
0.8962

3310

hypothetical protein
0.896

269513

PTZ00461
0.8951

7032

DUF2358 superfamily
0.894

1765

hypothetical protein
0.8912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 112.391 1.52E-26 406 - 747 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42888 PHATRDRAFT_42888 185384 192153 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 GO:0006508 GO:0008237 GO:0008270 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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