13920 PAP_central
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13920 chr_5 PAP_central 272081 273901 - PAP_central

Synonyms

NCBI ID Ensembl Genomes exon ID
7449648 Thaps13920.2, Thaps13920.1, Thaps13920.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0259

Most Highly Correlated Transcripts

bd875

(bd875) NA
0.9341

32217

MA3
0.9219

262797

Sec7
0.9188

261056

(APB3) Adaptin_N
0.9136

37366

Peptidase_C19 superfamily
0.9087

14527

Sugar_tr
0.9064

268475

C2 superfamily
0.9063

35129

(Tp_Myb2R9) PLN03142
0.9056

262025

GH18_chitinase-like superfamily
0.8997

8797

hypothetical protein
0.8993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(... cl11966 81.0643 2.45E-18 59 - 174 specific 143392
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 81.0643 2.45E-18 59 - 174 superfamily 264491
PAP_RNA-bind superfamily Poly(A) polymerase predicted RNA binding domain; Based on its similarity structurally to the RNA... - 70.3726 2.51E-14 381 - 516 superfamily 252881
PAP_central Poly(A) polymerase central domain; The central domain of Poly(A) polymerase shares structural... - 362.744 8.45E-121 18 - 379 multi-dom 252883

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12234 PHATRDRAFT_12234 203479 242988 445487 Cre10.g433750.t1.1 AT1G17980.1 474162

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0003676 GO:0004652 GO:0006350 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004652

polynucleotide adenylyltransferase activity

Details: 
Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

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