1622 AE_Prim_S
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1622 chr_1 AE_Prim_S 2006978 2008601 - AE_Prim_S

Synonyms

NCBI ID Ensembl Genomes exon ID
7443163 Thaps1622.2, Thaps1622.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0241
 0.29

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9708

bd1983

(bd1983) RecA-like_NTPases superfamily
0.958

8536

CDC6
0.9462

bd1214

(bd1214) KISc_C_terminal
0.9394

263366

Pkinase
0.9342

32661

ABC_ATPase superfamily
0.9272

bd529

(bd529) SNF2_N
0.9262

261635

(pcna) PLN00057
0.9228

10156

Tcp10_C superfamily
0.9217

35968

RecA-like_NTPases superfamily
0.9207

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AE_Prim_S AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/... cl01287 249.453 2.99E-79 100 - 428 specific 240130
AE_Prim_S_like superfamily AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and... - 249.453 2.99E-79 100 - 428 superfamily 260873

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54992 PHATRDRAFT_54992 188719 319749 73048 Cre07.g312350.t1.1 AT5G41880.1 360096

KEGG

KEGG description KEGG Pathway
DNA replication map03030

GO Terms

GO:0003896 GO:0006269 -

GO:0003896

DNA primase activity

Details: 
Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO Category: 
MF

GO:0006269

DNA replication, synthesis of RNA primer

Details: 
The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis.
GO Category: 
BP

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