16440 (RP3A) RNAP_RPB11_RPB3 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16440 chr_3 (RP3A) RNAP_RPB11_RPB3 superfamily 2400203 2401410 - RNAP_RPB11_RPB3 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443844 Thaps16440.3, Thaps16440.1, Thaps16440.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9303

19158

GRX_PICOT_like
0.915

267979

HCO3_cotransp superfamily
0.8869

23310

hypothetical protein
0.878

13308

PLN02948
0.8693

36007

Aldolase_II superfamily
0.8651

2622

hypothetical protein
0.8592

40200

TRX_reduct
0.8588

37118

FeThRed_B
0.8567

35136

NA
0.8508

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_RPB11_RPB3 superfamily RPB11 and RPB3 subunits of RNA polymerase; The eukaryotic RPB11 and RPB3 subunits of RNA polymerase... - 284.111 1.01E-94 7 - 309 superfamily 264356
PRK00783 DNA-directed RNA polymerase subunit D; Provisional - 220.912 3.34E-70 7 - 309 multi-dom 234837

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13566 PHATRDRAFT_13566 267685 312302 197736 Cre10.g419750.t1.2 AT2G15430.1 554134

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003899 GO:0006350 GO:0046983 GO:0003900 GO:0003901 GO:0003902 -

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0046983

protein dimerization activity

Details: 
The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments