21220 KU superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21220 chr_2 KU superfamily 673535 677363 - KU superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450193 Thaps21220.1, Thaps21220.3, Thaps21220.4, Thaps21220.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0412

Most Highly Correlated Transcripts

268825

COG5647
0.9413

3676

hypothetical protein
0.937

9036

hypothetical protein
0.9333

6823

COG2 superfamily
0.9312

10934

Adenylation_DNA_ligase_like superfamily
0.9277

3929

Peptidase_C48 superfamily
0.9273

21843

hypothetical protein
0.9265

262619

Spc97_Spc98
0.9248

8287

hypothetical protein
0.9242

1900

hypothetical protein
0.9218

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KU superfamily Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-... - 105.45 1.28E-24 414 - 645 superfamily 261400
LRR_RI superfamily Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue... - 68.5361 1.63E-12 746 - 870 superfamily 238064

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47127 PHATRDRAFT_47127 240046 64406 Not available Not available Not available 316299

KEGG

KEGG description KEGG Pathway
Non-homologous end-joining map03450

GO Terms

Not available -

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