2182 CPSF_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2182 chr_2 CPSF_A 370546 375376 + CPSF_A

Synonyms

NCBI ID Ensembl Genomes exon ID
7448640 Thaps2182.3, Thaps2182.2, Thaps2182.4, Thaps2182.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Most Highly Correlated Transcripts

20915

hypothetical protein
0.8869

22138

Sec3_C superfamily
0.8801

25678

hypothetical protein
0.8789

261045

PI3Kc_like superfamily
0.8769

24245

hypothetical protein
0.876

21997

TPR_12
0.875

24544

hypothetical protein
0.8694

24145

hypothetical protein
0.8678

25593

hypothetical protein
0.867

22804

Delta6-FADS-like
0.8663

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 214.013 4.62E-61 1077 - 1446 superfamily 251781
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 214.013 4.62E-61 1077 - 1446 superfamily 251781
MMS1_N superfamily Mono-functional DNA-alkylating methyl methanesulfonate N-term; MMS1 is a protein that protects... - 161.755 1.22E-41 180 - 765 superfamily 255985

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40985 PHATRDRAFT_29502 PHATRDRAFT_29502 135945 258697 429357 Cre10.g432000.t1.2 AT4G21100.1 259403

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0003676 GO:0005634 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

Add comment

Log in to post comments