24429 PRMT5 superfamilyThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24429	chr_12	PRMT5 superfamily	190207	193536	-	PRMT5 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449373	Thaps24429.4, Thaps24429.1, Thaps24429.2, Thaps24429.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0195	0.28	0.52 1.7

Most Highly Correlated Transcripts

22356 PseudoU_synth_ScPUS7 0.9383	22499 TrmA 0.9375	21222 SrmB 0.9281	269080 PLN02327 0.9233	34596 WD40 0.9233	37748 SpoVK 0.921
22417 Sun 0.9192	21173 hypothetical protein 0.9168	264632 COG0826 0.9162	21959 hypothetical protein 0.9151

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PRMT5 superfamily		PRMT5 arginine-N-methyltransferase; The human homologue of yeast Skb1 (Shk1 kinase-binding protein...	-	393.155	3.68E-127	241 - 875	superfamily	266759

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16141	PHATRDRAFT_16141	187478	254590	67341	Cre03.g176550.t1.1	AT4G31120.1	516025

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0005737 GO:0008168 GO:0000179 GO:0003880 GO:0008169 GO:0008170 GO:0008171 GO:0008172 GO:0008173 GO:0008174 GO:0008175 GO:0008276 GO:0008326 GO:0008425 GO:0008649 GO:0008650 GO:0009008 GO:0009383 GO:0016205 GO:0016273 GO:0016274 GO:0016278 GO:0016279 GO:0016300 GO:0016423 GO:0016424 GO:0016426 GO:0016427 GO:0016431 GO:0016433 GO:0016434 GO:0016435 GO:0016436 GO:0018423 GO:0018707 GO:0019702 GO:0030792 -

GO:0005737

cytoplasm

Details:

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

GO Category:

GO:0008168

methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to an acceptor molecule.

GO Category:

GO:0000179

rRNA (adenine-N6,N6-)-dimethyltransferase activity

Details:

Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.

GO Category:

GO:0003880

protein C-terminal carboxyl O-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the oxygen atom of a carboxyl group at the C-terminal of a protein.

GO Category:

GO:0008169

C-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the carbon atom of an acceptor molecule.

GO Category:

GO:0008170

N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule.

GO Category:

GO:0008171

O-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.

GO Category:

GO:0008172

S-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the sulfur atom of an acceptor molecule.

GO Category:

GO:0008173

RNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

GO Category:

GO:0008174

mRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an mRNA molecule.

GO Category:

GO:0008175

tRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.

GO Category:

GO:0008276

protein methyltransferase activity

Details:

Catalysis of the transfer of a methyl group (CH3-) to a protein.

GO Category:

GO:0008425

2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity

Details:

Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine.

GO Category:

GO:0008649

rRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.

GO Category:

GO:0008650

rRNA (uridine-2'-O-)-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methyluridine.

GO Category:

GO:0009008

DNA-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to a DNA molecule.

GO Category:

GO:0009383

rRNA (cytosine-C5-)-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to cytosine to form 5-methylcytosine in small subunit ribosomal RNA.

GO Category:

GO:0016205

selenocysteine methyltransferase activity

Details:

Catalysis of the reaction: selenocysteine + S-adenosyl-L-methionine = Se-methylselenocysteine + S-adenosyl-homocysteine.

GO Category:

GO:0016273

arginine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to an amino group of an arginine residue.

GO Category:

GO:0016274

protein-arginine N-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + (protein)-arginine = S-adenosyl-L-homocysteine + (protein)-N-methyl-arginine.

GO Category:

GO:0016278

lysine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue.

GO Category:

GO:0016279

protein-lysine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.

GO Category:

GO:0016300

tRNA (uracil) methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a uracil residue in a tRNA molecule.

GO Category:

GO:0016423

tRNA (guanine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylguanine.

GO Category:

GO:0016426

tRNA (adenine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methyladenine.

GO Category:

GO:0016427

tRNA (cytosine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylcytosine.

GO Category:

GO:0016433

rRNA (adenine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyladenine.

GO Category:

GO:0016434

rRNA (cytosine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylcytosine.

GO Category:

GO:0016435

rRNA (guanine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylguanine.

GO Category:

GO:0016436

rRNA (uridine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyluridine.

GO Category:

GO:0018423

protein C-terminal leucine carboxyl O-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + protein L-leucine = S-adenosyl-L-homocysteine + protein L-leucine methyl ester. This modification occurs only at the oxygen atoms of the free alpha carboxyl group of a leucine residue at the C-terminus of the protein.

GO Category:

GO:0018707

1-phenanthrol methyltransferase activity

Details:

Catalysis of the reaction: 1-phenanthrol + X-CH3 = X + 1-methoxyphenanthrene.

GO Category:

GO:0019702

protein-arginine N5-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the delta-nitrogen atom of peptidyl-arginine residues.

GO Category:

GO:0030792

methylarsonite methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + methylarsonite = S-adenosyl-L-homocysteine + dimethylarsinate.

GO Category: