269917 TrmAThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269917	chr_17	TrmA	423559	427545	+	TrmA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444231	Thaps269917.4, Thaps269917.3, Thaps269917.1, Thaps269917.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0179	0.28	970 57

Most Highly Correlated Transcripts

10278 YihA_EngB 0.9081	22356 PseudoU_synth_ScPUS7 0.906	24429 PRMT5 superfamily 0.8998	32996 (Tp_CCCH4) DUS_like_FMN 0.894	5236 DUF819 superfamily 0.8939	37748 SpoVK 0.8928
264632 COG0826 0.8915	42821 PRK14333 0.887	3944 COG0218 0.8864	38662 BING4CT 0.8829

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TrmA		SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation,...	-	167.492	5.89E-46	99 - 527	multi-dom	225174

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42844	PHATRDRAFT_42844	195515	154965	445278	Cre02.g101950.t1.2	AT2G28450.1	496969

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008757 GO:0000179 GO:0003880 GO:0008168 GO:0008169 GO:0008170 GO:0008171 GO:0008172 GO:0008173 GO:0008174 GO:0008175 GO:0008276 GO:0008326 GO:0008425 GO:0008649 GO:0008650 GO:0009008 GO:0009383 GO:0016205 GO:0016273 GO:0016274 GO:0016278 GO:0016279 GO:0016300 GO:0016423 GO:0016424 GO:0016426 GO:0016427 GO:0016431 GO:0016433 GO:0016434 GO:0016435 GO:0016436 GO:0018423 GO:0018707 GO:0019702 GO:0030792 -

GO:0008757

S-adenosylmethionine-dependent methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.

GO Category:

GO:0000179

rRNA (adenine-N6,N6-)-dimethyltransferase activity

Details:

Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.

GO Category:

GO:0003880

protein C-terminal carboxyl O-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the oxygen atom of a carboxyl group at the C-terminal of a protein.

GO Category:

GO:0008168

methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to an acceptor molecule.

GO Category:

GO:0008169

C-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the carbon atom of an acceptor molecule.

GO Category:

GO:0008170

N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule.

GO Category:

GO:0008171

O-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.

GO Category:

GO:0008172

S-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to the sulfur atom of an acceptor molecule.

GO Category:

GO:0008173

RNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

GO Category:

GO:0008174

mRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an mRNA molecule.

GO Category:

GO:0008175

tRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.

GO Category:

GO:0008276

protein methyltransferase activity

Details:

Catalysis of the transfer of a methyl group (CH3-) to a protein.

GO Category:

GO:0008425

2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity

Details:

Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine.

GO Category:

GO:0008649

rRNA methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.

GO Category:

GO:0008650

rRNA (uridine-2'-O-)-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methyluridine.

GO Category:

GO:0009008

DNA-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group to a DNA molecule.

GO Category:

GO:0009383

rRNA (cytosine-C5-)-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to cytosine to form 5-methylcytosine in small subunit ribosomal RNA.

GO Category:

GO:0016205

selenocysteine methyltransferase activity

Details:

Catalysis of the reaction: selenocysteine + S-adenosyl-L-methionine = Se-methylselenocysteine + S-adenosyl-homocysteine.

GO Category:

GO:0016273

arginine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to an amino group of an arginine residue.

GO Category:

GO:0016274

protein-arginine N-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + (protein)-arginine = S-adenosyl-L-homocysteine + (protein)-N-methyl-arginine.

GO Category:

GO:0016278

lysine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue.

GO Category:

GO:0016279

protein-lysine N-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.

GO Category:

GO:0016300

tRNA (uracil) methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from a donor to a uracil residue in a tRNA molecule.

GO Category:

GO:0016423

tRNA (guanine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylguanine.

GO Category:

GO:0016426

tRNA (adenine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methyladenine.

GO Category:

GO:0016427

tRNA (cytosine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylcytosine.

GO Category:

GO:0016433

rRNA (adenine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyladenine.

GO Category:

GO:0016434

rRNA (cytosine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylcytosine.

GO Category:

GO:0016435

rRNA (guanine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylguanine.

GO Category:

GO:0016436

rRNA (uridine) methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyluridine.

GO Category:

GO:0018423

protein C-terminal leucine carboxyl O-methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + protein L-leucine = S-adenosyl-L-homocysteine + protein L-leucine methyl ester. This modification occurs only at the oxygen atoms of the free alpha carboxyl group of a leucine residue at the C-terminus of the protein.

GO Category:

GO:0018707

1-phenanthrol methyltransferase activity

Details:

Catalysis of the reaction: 1-phenanthrol + X-CH3 = X + 1-methoxyphenanthrene.

GO Category:

GO:0019702

protein-arginine N5-methyltransferase activity

Details:

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the delta-nitrogen atom of peptidyl-arginine residues.

GO Category:

GO:0030792

methylarsonite methyltransferase activity

Details:

Catalysis of the reaction: S-adenosyl-L-methionine + methylarsonite = S-adenosyl-L-homocysteine + dimethylarsinate.

GO Category: