22766 PRK05218Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22766	chr_5	PRK05218	1321321	1323701	-	PRK05218

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450092	Thaps22766.2, Thaps22766.5, Thaps22766.4, Thaps22766.1, Thaps22766.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0205

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0240	0.25	940 340

Most Highly Correlated Transcripts

34810 Calreticulin 0.8894	8303 Glyco_trans_1_2 0.8715	23616 Peptidase_A22B superfamily 0.8711	1417 GpcrRhopsn4 superfamily 0.856	3154 (Tp_HSF_1b) HSF_DNA-bind 0.8554	25085 hypothetical protein 0.8545
5638 hypothetical protein 0.8513	1011 DSPc superfamily 0.8438	9467 hypothetical protein 0.8432	bd1150 (bd1150) PLN02433 0.8402

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HSP90 superfamily		Hsp90 protein; Hsp90 protein.	-	425.722	1.17E-140	172 - 709	superfamily	249661
PRK05218		heat shock protein 90; Provisional	-	622.903	0	1 - 676	multi-dom	235366

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16786	PHATRDRAFT_16786	259629	324747	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0006457 GO:0051082 GO:0005524 GO:0003763 -

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