23812 TrmAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23812	chr_8	TrmA	872869	874965	+	TrmA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449841	Thaps23812.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0179	0.28	970 57

Most Highly Correlated Transcripts

268136 COG1054 0.9407	268027 Met_10 0.9275	19623 RRM3_MEI2_like 0.9267	270120 Uup 0.9265	20825 hypothetical protein 0.9229	23210 hypothetical protein 0.9219
5806 TIM_phosphate_binding superfamily 0.9215	22965 SrmB 0.9209	21698 hypothetical protein 0.9155	34596 WD40 0.9138

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TrmA		SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation,...	-	78.8962	7.49E-16	454 - 638	multi-dom	225174

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44055	PHATR_44055	202915	227071	118592	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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