24035 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24035 chr_9 Peptidase_C19 superfamily 826014 836376 - Peptidase_C19 superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0127

Most Highly Correlated Transcripts

22922

hypothetical protein
0.9429

5788

TFIIS_M
0.9321

23971

zf-UBR
0.9315

24618

hypothetical protein
0.9288

263610

COG3899
0.9258

11261

WD40 superfamily
0.9237

23645

DUF3638 superfamily
0.9223

21158

hypothetical protein
0.9218

25593

hypothetical protein
0.9176

23207

hypothetical protein
0.9153

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 242.163 4.66E-70 1840 - 2329 superfamily 261337
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 152.947 9.97E-40 1840 - 2291 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46080 PHATRDRAFT_46080 174500 326427 Not available Cre03.g191900.t1.2 Not available 559717

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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