24211 DCR_FMN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24211 chr_10 DCR_FMN 697577 700325 - DCR_FMN

Synonyms

NCBI ID Ensembl Genomes exon ID
7445927 Thaps24211.3, Thaps24211.1, Thaps24211.2, Thaps24211.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0440

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0112
 0.40

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9296

bd446

(bd446) HrpA
0.9095

261400

NA
0.8742

264556

FBPase
0.8642

bd1949

(bd1949) NA
0.8637

6028

NA
0.8632

262510

Alg6_Alg8 superfamily
0.8584

268257

fabG
0.8559

bd624

(bd624) Glyco_transf_34 superfamily
0.8352

13393

PLN02321
0.8342

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme... cl17186 598.116 0 53 - 439 specific 239240
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 598.116 0 53 - 439 superfamily 266538
HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] - 93.8262 1.33E-20 446 - 758 multi-dom 223523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31367 PHATRDRAFT_31367 175014 257690 236524 Cre01.g050150.t1.1 AT1G76690.1 507629

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0015036 GO:0008670 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0008670

2,4-dienoyl-CoA reductase (NADPH) activity

Details: 
Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+.
GO Category: 
MF

Add comment

Log in to post comments