24227 RNR_PFL superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24227	chr_10	RNR_PFL superfamily	822980	824387	-	RNR_PFL superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446898	Thaps24227.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0154

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0177	0.33	930 14000

Most Highly Correlated Transcripts

261400 NA 0.898	4108 hypothetical protein 0.8874	16295 FBPase 0.8677	31829 CBS_like 0.8609	262510 Alg6_Alg8 superfamily 0.8552	9581 hypothetical protein 0.8508
268592 VDE superfamily 0.8445	268908 Trans_IPPS_HH 0.8439	269937 M1_APN_2 0.84	36037 Trypsin_2 0.8388

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNR_PFL superfamily		Ribonucleotide reductase and Pyruvate formate lyase; Ribonucleotide reductase (RNR) and pyruvate...	-	185.562	1.87E-53	6 - 446	superfamily	245211

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31982	PHATRDRAFT_31982	196268	285382	113409	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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